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UniProtKB/Swiss-Prot entry P62161


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name CALM_RAT
Primary accession number P62161
Secondary accession numbers P02593 P70667 P99014 Q61379 Q61380
Integrated into Swiss-Prot on July 21, 1986
Sequence was last modified on January 23, 2007 (Sequence version 2)
Annotations were last modified on    November 4, 2008 (Entry version 61)
Name and origin of the protein
Protein name Calmodulin
Synonym CaM
Gene names
Name: Calm1
Synonyms: Calm, Cam, Cam1
and
Name: Calm2
Synonyms: Cam2, Camb
and
Name: Calm3
Synonyms: Cam3, Camc
From
Rattus norvegicus (Rat) [TaxID: 10116] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Brain;
PubMed=2885164 [NCBI, ExPASy, EBI, Israel, Japan]
Sherbany A.A., Parent A.S., Brosius J.;
"Rat calmodulin cDNA.";
DNA 6:267-272(1987).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Brain;
DOI=10.1016/0022-2836(87)90258-0; PubMed=3035194 [NCBI, ExPASy, EBI, Israel, Japan]
Nojima H., Hirofumi S.;
"Structure of a gene for rat calmodulin.";
J. Mol. Biol. 193:439-445(1987).
[3]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=3037336 [NCBI, ExPASy, EBI, Israel, Japan]
Nojima H., Kishi K., Sokabe H.;
"Multiple calmodulin mRNA species are derived from two distinct genes.";
Mol. Cell. Biol. 7:1873-1880(1987).
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=SHR;
DOI=10.1016/0022-2836(89)90388-4; PubMed=2527998 [NCBI, ExPASy, EBI, Israel, Japan]
Nojima H.;
"Structural organization of multiple rat calmodulin genes.";
J. Mol. Biol. 208:269-282(1989).
[5]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=Wistar;
TISSUE=Brain;
DOI=10.1016/0169-328X(92)90039-E; PubMed=1315919 [NCBI, ExPASy, EBI, Israel, Japan]
Ni B., Rush S., Gurd J.W., Brown I.R.;
"Molecular cloning of calmodulin mRNA species which are preferentially expressed in neurons in the rat brain.";
Brain Res. Mol. Brain Res. 13:7-17(1992).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Pituitary;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[7]
PROTEIN SEQUENCE OF 2-149, ACETYLATION AT ALA-2, AND METHYLATION AT LYS-116.
TISSUE=Testis;
PubMed=201628 [NCBI, ExPASy, EBI, Israel, Japan]
Dedman J.R., Jackson R.L., Schreiber W.E., Means A.R.;
"Sequence homology of the Ca2+-dependent regulator of cyclic nucleotide phosphodiesterase from rat testis with other Ca2+-binding proteins.";
J. Biol. Chem. 253:343-346(1978).
[8]
PROTEIN SEQUENCE OF 15-31; 79-87 AND 92-107, AND MASS SPECTROMETRY.
STRAIN=Sprague-Dawley;
TISSUE=Brain, and Hippocampus;
Lubec G., Chen W.-Q., Kang S.U., Lubec S.;
Submitted (SEP-2007) to UniProtKB.
[9]
PHOSPHORYLATION AT THR-45.
DOI=10.1016/S0003-9861(02)00514-3; PubMed=12392717 [NCBI, ExPASy, EBI, Israel, Japan]
Ishida A., Kameshita I., Okuno S., Kitani T., Fujisawa H.;
"Phosphorylation of calmodulin by Ca2+/calmodulin-dependent protein kinase IV.";
Arch. Biochem. Biophys. 407:72-82(2002).
[10]
ACETYLATION AT ALA-2, AND MASS SPECTROMETRY.
Lubec G., Chen W.-Q.;
Submitted (FEB-2007) to UniProtKB.
[11]
X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS).
DOI=10.1038/315037a0; PubMed=3990807 [NCBI, ExPASy, EBI, Israel, Japan]
Babu Y.S., Sack J.S., Greenhough T.J., Bugg C.E., Means A.R., Cook W.J.;
"Three-dimensional structure of calmodulin.";
Nature 315:37-40(1985).
[12]
X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS).
DOI=10.1016/0022-2836(88)90608-0; PubMed=3145979 [NCBI, ExPASy, EBI, Israel, Japan]
Babu Y.S., Bugg C.E., Cook W.J.;
"Structure of calmodulin refined at 2.2-A resolution.";
J. Mol. Biol. 204:191-204(1988).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M16659; AAA40864.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X13817; CAA32050.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M19312; AAA40862.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M17069; AAA40863.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X13933; CAA32120.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X13931; CAA32119.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X13932; CAA32119.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X05117; CAA32119.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X13833; CAA32062.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X13834; CAA32062.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X13835; CAA32062.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X14265; CAA32478.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF178845; AAD55398.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC058485; AAH58485.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC063187; AAH63187.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR S03206; MCRT.
RefSeq NP_036650.1; -.
NP_059022.1; -.
NP_114175.1; -.
UniGene Rn.216430
3D structure databases
PDB
1G4Y; X-ray; 1.60 A; R=1-149.[ExPASy / RCSB / EBI]
1NIW; X-ray; 2.05 A; A/C/E/G=1-149.[ExPASy / RCSB / EBI]
1QX5; X-ray; 2.54 A; B/D/I/J/K/R/T/Y=1-149.[ExPASy / RCSB / EBI]
1QX7; X-ray; 3.09 A; A/B/I/M/R=1-149.[ExPASy / RCSB / EBI]
2HQW; X-ray; 1.90 A; A=2-149.[ExPASy / RCSB / EBI]
2PQ3; X-ray; 1.30 A; A=2-77.[ExPASy / RCSB / EBI]
3B32; X-ray; 1.60 A; A=2-76.[ExPASy / RCSB / EBI]
3BXK; X-ray; 2.55 A; A/C=2-149.[ExPASy / RCSB / EBI]
3BXL; X-ray; 2.30 A; A=2-149.[ExPASy / RCSB / EBI]
3CLN; X-ray; 2.20 A; A=2-149.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1G4Y; -.
1NIW; -.
1QX5; -.
1QX7; -.
2HQW; -.
2PQ3; -.
3B32; -.
3BXK; -.
3BXL; -.
3CLN; -.
ModBase P62161.
Protein-protein interaction databases
IntAct P62161; -.
PTM databases
PhosphoSite P62161; -.
Organism-specific databases
RGD 2257; Calm1.
2258; Calm2.
2259; Calm3.
Gene expression databases
ArrayExpress P62161; -.
GermOnline ENSRNOG00000004060; Rattus norvegicus.
ENSRNOG00000016770; Rattus norvegicus.
Ontologies
GO
GO:0005515; Molecular function: protein binding (inferred from physical interaction from UniProtKB).
QuickGo view.
Family and domain databases
InterPro IPR011992; EF-Hand_type.
IPR002048; EF_hand_Ca_bd.
IPR001125; Recoverin.
Graphical view of domain structure.
Gene3D G3DSA:1.10.238.10; EF-Hand_type; 1.
Pfam PF00036; efhand; 4.
Pfam graphical view of domain structure.
PRINTS PR00450; RECOVERIN.
ProDom PD000012; EF-hand; 2.
[Domain structure / List of seq. sharing at least 1 domain]
SMART SM00054; EFh; 4.
SMART graphical view of domain structure.
PROSITE PS00018; EF_HAND_1; 4.
PS50222; EF_HAND_2; 4.
PROSITE graphical view of domain structure (profiles).
BLOCKS P62161.
ProtoNet P62161.
Genome annotation databases
Ensembl ENSRNOG00000004060; Rattus norvegicus. [Contig view]
ENSRNOG00000016770; Rattus norvegicus. [Contig view]
GeneID 24242; -.
24244; -.
50663; -.
KEGG rno:24242; -.
rno:24244; -.
rno:50663; -.
Phylogenomic databases
HOVERGEN P62161; -.
Other
LinkHub P62161; -.
NextBio 602729; -.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Acetylation; Calcium; Direct protein sequencing; Methylation; Phosphoprotein; Repeat; Ubl conjugation.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
INIT_MET   1     1        Removed. 
CHAIN   2   149  148     Calmodulin. PRO_0000198227
DOMAIN   8    43  36     EF-hand 1. 
DOMAIN   44    79  36     EF-hand 2. 
DOMAIN   81   116  36     EF-hand 3. 
DOMAIN   117   149  33     EF-hand 4. 
CA_BIND   21    32  12     1. 
CA_BIND   57    68  12     2. 
CA_BIND   94   105  12     3. 
CA_BIND   130   141  12     4. 
MOD_RES   2     2        N-acetylalanine. 
MOD_RES   45    45        Phosphothreonine; by CaMK4. 
MOD_RES   100   100        Phosphotyrosine (By similarity). 
MOD_RES   116   116        N6,N6,N6-trimethyllysine. 
CROSSLNK   22    22        Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) (By similarity). 
HELIX   7    19  13      
STRAND   24    29  6      
HELIX   30    32  3      
HELIX   33    39  7      
HELIX   46    56  11      
STRAND   61    65  5      
HELIX   66    76  11      
HELIX   83    91  9      
STRAND   97   102  6      
HELIX   103   110  8      
HELIX   119   129  11      
STRAND   133   138  6      
HELIX   139   147  9      
Sequence information
Length: 149 AA [This is the length of the unprocessed precursor] Molecular weight: 16838 Da [This is the MW of the unprocessed precursor] CRC64: 6B4BC3FCDE10727B [This is a checksum on the sequence]
        10         20         30         40         50         60 
MADQLTEEQI AEFKEAFSLF DKDGDGTITT KELGTVMRSL GQNPTEAELQ DMINEVDADG 

        70         80         90        100        110        120 
NGTIDFPEFL TMMARKMKDT DSEEEIREAF RVFDKDGNGY ISAAELRHVM TNLGEKLTDE 

       130        140 
EVDEMIREAD IDGDGQVNYE EFVQMMTAK 

P62161 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
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